runtest error |
- Date: 2016/06/26 12:39
- Name: Kazume NISHIDATE
<nisidate@iwate-u.ac.jp>
- Dear developers,
I'm a beginner of the OpenMX.
I could successfully compile it on my machine.
==============
nisidate@rikyu:~/OpenMX/openmx3.8/work$ uname -a
Linux rikyu 4.4.0-24-generic #43-Ubuntu SMP Wed Jun 8 19:25:16 UTC 2016 i686 i686 i686 GNU/Linux
==============
The compiler and mkl library I use are
==============
parallel_studio_xe_2016.tgz
l_mkl_11.3.3.210.tgz
==============
which were downloaded from the Intel web-site.
These are supposed to be free for academic use.
The CC and FC lines in the makefile are
==============
CC = icc -O3 -openmp -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/i
nclude/fftw -I/usr/include/mpich
FC = ifort -O3 -openmp -I/usr/include/mpich
LIB= -L/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/lib -mkl=parallel
-lmkl_intel -lmkl_intel_thread -lmkl_core -lpthread -lifcore -lmpi -lmpif90 -lm
pif77
==============
In the testrun, I encountered the error of
==============
nisidate@rikyu: mpirun -np 1 ../source/openmx -runtest
<<< skipping the first output messages >>>
Num. of grids overlapping with atom 1 = 167056
Num. of grids overlapping with atom 2 = 167056
*******************************************************
SCF calculation at MD = 1
*******************************************************
<MD= 1> Calculation of the overlap matrix
<MD= 1> Calculation of the nonlocal matrix
<MD= 1> Calculation of the VNA projector matrix
******************* MD= 1 SCF= 1 *******************
<Cluster> Solving the eigenvalue problem...
Assertion failed in file src/mpid/ch3/src/ch3u_buffer.c at line 77: FALSE
memcpy argument memory ranges overlap, dst_=0x1431c090 src_=0x1431c090 len_=160
internal ABORT - process 0
[mpiexec@rikyu] handle_pmi_cmd (./pm/pmiserv/pmiserv_cb.c:78): Unrecognized PMI command: abort | cleaning up processes
[mpiexec@rikyu] control_cb (./pm/pmiserv/pmiserv_cb.c:868): unable to process PMI command
[mpiexec@rikyu] HYDT_dmxu_poll_wait_for_event (./tools/demux/demux_poll.c:77): callback returned error status
[mpiexec@rikyu] HYD_pmci_wait_for_completion (./pm/pmiserv/pmiserv_pmci.c:435): error waiting for event
[mpiexec@rikyu] main (./ui/mpich/mpiexec.c:901): process manager error waiting for completion
==============
I also tried the runtime options, "-np2" and "-np4",
but these returned the same message.
Is this a serious error?
Any suggestion is welcome.
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